Looking for the price of a flight from San Diego to San Juan?

There’s no fixed price — fares between San Diego and San Juan can vary a lot by day or time.

Select your dates to check current offers.

It’s often useful to check whether nearby airports offer better fares. Flying during less crowded periods also increases your chances of finding good deals.

Is there more than one airport in San Diego or San Juan?

Even short-haul routes can benefit from considering secondary airports. It may open up more flight times or cheaper fares.

• Airports in San Diego: One more airport is available besides San Diego - International, McClellan-Palomar.
• Airports in San Juan: Isla Grande is another arrival option.

Airports with more daily flights offer more flexibility if plans change or delays occur. If you’re flexible, consider airports near San Juan as well.

Find the best flight from San Diego to San Juan

With Jetcost, you can filter results by flight time, airline, price range, and layovers. Choose direct or connecting flights, round-trip or one-way, and compare offers from the best airlines and travel agencies.

Other popular destinations

Searching for flights to Puerto Rico? Travelers also looked at: Aguadilla, Culebra Airport, Ponce, San Juan, Vieques Airport.

Use filters to exclude options that don’t match your budget or travel preferences and personalize your search for San Diego – San Juan flights.